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OJB®

Online Journal of Bioinformatics ©

 (Cited as Onl J Bioinform©)


Established 1995

ISSN  1443-2250


Managing Editors:

Guerrini VH., DVM, MVSc, MCompSci, PhD (Bioinformatics, IE),
Alexandra Huger Meister BA, MA (CH),
Rachel Durnsford BA (AU).

Scientific Board:

Ben-Miled Z., BSc, MSc, PhD (Computer Engineering, USA),
Bodèn M.,  BSc, MSc, PhD  (Machine learning, sequence analysis, AU)
Böhringer S., MD, BSc, MSc, PhD (Genetic analysis, DE),
Bourne DWA.,
BPharm, PhD (Pharmacokinetics, USA)
Ceraj I., DipEng, MSc (Software engineering, MIT, USA),
Chen Y., BS, ME, PhD (Bioinformatics, Software and electronic engineering, Case Western, USA),
Colomb RM., BSc, PhD (Informatics, CA),
Daggard G., BSc, PhD (Genetics, AU),
Dressel U.,  BSc, Hons, PhD (Genetics, DE), 
Dubitzky W., Dipl Ing, MSc, DPhil (Bioinformatics, DE),
Filippich LJ., BSc, BVSc, PhD (Genetics, AU),  

Gao S., BS, PhD (Bioinformatics, USA)
Harrison J., BSc, MSc, PhD (Data-mining, USA),

Hughes I.,  BVSc, PhD,  (Genetics AU)

Maetschke SR., MSc, PhD (Software, learning, processing, DE),
Jiang Y., BSc, MSc, Msc, PhD, (Data analysis, oncology, USA),
Lea R., BSc, PhD (Genetic analysis, AU),
Lund EM., DVM, MPH, PhD (Informatics, USA),
Mallick B, M.Tech, PhD (Bioinformatics, USA),

Olsson BE., BSc, MSc, PhD (Bioinformatics, SE),
O'Kane KC., BS PhD (Bioinformatics, USA),

Shen L., BSc, PhD (Machine Learning, USA),

Song M., PhD (Text Mining, Bioinformatics, Information,  USA),
Teasdale RG., BSc, PhD (Computational Cell Biology, AU),

Thongboonkerd V, MD, FRCPT (Proteomics, USA).
Wang H., 
BEng, MSc, PhD (Gene expression, UK)
Wu D BS, PhD (Bioinformatics and drug design, USA),

Yao J MSc, PhD (Plant genomics, USA ),
Zou M., MSc, PhD (Cancer Biology and  Human Genetics, USA).


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ABSTRACT CONTENTS

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Identification of single nucleotide polymophisms using CLC and SeqMan transcriptome sequencing data
          Sajnani MR, Bhatt VD, Joshi CG., 14(1):66-75, 2013.
                   
Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry, Anand  Agricultural University,  Gujarat, India.

             Submitted Jan 12, Rev Feb 4, Publish Feb 27. Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Amino acid composition model for prediction and identification of Alpha and Epsilon-proteobacteria

          Shanker A, Pardasani KR., 14(1):51-55, 2013.
                    Department of Mathematics, Bioinformatics & Computer Α-plications. MANIT, Bhopal, India.

             Submitted Feb 10, Rev Feb 13, Publish Feb 19. Review Report, Data

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      A Parkinson’s disease mitochondrial dysfunction pathway with gene hubs.   

        Balakrishnan ik, Rangasamy s, Natarajan J.,  13(3):375-381, 2012. 

          Department of Bioinformatics, Bharathiar University, Coimbatore, Tamilnadu, India.

           Submitted Sep 14  Rev Sept 21,  Publish Oct 16,  Review Report, Data


2012 (2)

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      3D Model of Zn2+ Binding Domain of Peptidase M48 Ste24p from Cyanothece Sp. (Strain PCC 7822)   

         Patra MC, Rath SN, Bhoi GK, Pradhan SK.,  13(2):360-374, 2012. 

             Department of Bioinformatics, Orissa University of Agriculture and Technology, Bhubaneswar, Orissa, India

             Submitted Aug 21,  Rev Sept 21,  Publish Oct 12,  Review Report, Data

            

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Virtual PfkB Mycobacterium tuberculosis H37Rv protein  

        Nayak S, Umadevi K, Jagannath M.,  13(2):331-359, 2012. 

           DBT – BIF Programme, Department of Marine Living Resources, Andhra University, Visakhapatnam AP,  India,

           Submitted Jun 3,  Rev Sept 13, Publish Oct 8,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Characterization of Coilin protein nucleotide binding region in Homo sapiens. 

        Zaman A., 13(2):314-330, 2012. 

           DMolecular Biology Laboratory, Department of Biochemistry and Molecular Biology and  Department of Genetic engineering and Biotechnology, University of Dhaka, Bangladesh.   

           Submitted Aug 10,  Rev Sept 3, Publish Sep 28,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Riboswitch as a target for Streptococcus pneumoniae. 

        Mujwar S, Pardasani KR., 13(2):285-313, 2012. 

           Department of Mathematics, MANIT Bhopal, India  

           Submitted Aug 14,  Rev Aug 24, Publish Sep 22.  Review Report, Data


http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif    
 Machine learning models to classify HIV membrane and soluble proteins  
       
Dubey A,  Chouhan U., 13(2):274-284, 2012. 
           Department(s) of Bioinformatics and Mathematics, MANIT, BHOPAL (M.P) 
           Submitted Jul 6,  Rev Aug 22, Publish Sep 18.  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Homology and molecular docking of Pseudomonas aeruginosa RND MexY efflux pump  
       
Bhaskar BV, Munichandrababu T, Bhuvaneswar C, Rajendra W., 13(2):260-273, 2012. 
           DBT-Bioinformatics Center, Department of Zoology, Sri Venkateswara University, Tirupati
. 
           Submitted Aug 16,  Rev Aug 20, Publish Sep 16.  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     In silico characterization of bacterial, fungal and plant polygalacturonase protein sequence 

        Dubey AK, Yadav S, Rajput R, Anand G, Yadav D. 13(2):246-259, 2012. 

           Department of Biotechnology, D.D.U Gorakhpur University, Gorakhpur,  Mahila Mahavidyalaya, Banaras Hindu University, Varanasi, Uttar Pradesh  India., Corresponding author:
          
Australian Centre for Plant Functional Genomics, University of Adelaide, Glen  Osmond, South Australia 5064, Australia.
 

           Submitted Aug 12,  Rev Aug 18, Publish Sep 12.  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Amplification, In-silico classification, characterization and molecular modeling of Histone H2B gene from Setaria cervi

          Yadav SS, SinghVK, Liebau E, Rathaur S.13(2):232-245, 2012.

           Department of Biochemistry, Centre for Bioinformatics, Faculty of Science, Banaras Hindu University, Varanasi, India and Westfalische Wilhelms-Uinversitat, Institute of Animal Physiology, Department of 

            Molecular  Physiology, Hindenburgplatz-55, Muenster, Germany.

            Submitted Aug 10, Rev Aug 15, Publish Sep 2. Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Molecular docking of a beta-2-microglobulin drug target 

        Navya P, Hema K, Munikumar M, Swargam S, Umamaheswari A., 13(2):222-231, 2012. 

           SVIMS Bioinformatics Centre, Department of Bioinformatics, SVIMS University, Tirupati - India.

           Submitted Jun 14,  Rev Jul 25, Publish Aug 12.  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Microarray informatics and virtual screening for acute myeloid leukemia targets.

        Shree T, Banerjee S, Srivastava S., 13(2):214-221, 2012. 

           Institute of Computational Biology, Domlur Layout, Bangalore, Amity University Campus, Malhaur, Lucknow, Uttar Pradesh, India.

           Submitted Jul 16,  Rev Jul 16, Publish Aug 2.  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Mining fuzzy associations among amino acids of class A GPCRs.

        Kumari T, Pardasani KR., 13(2):202-213, 2012. 

           Department of Bioinformatics. MANIT, Bhopal, India

           Submitted Jun 26,  Rev Jul 14, Publish Jul 29.  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Drug target H1N2 (swine influenza) and H5N2 (avian influenza):ligand structure design

        Sivan A, Antony S, Reegan AD., 13(2):192-201, 2012. 

           Regional Medical Research Institute, ICMR, Port Blair and Division of bioinformatics, Entomology Research Institute, Loyola College, Chennai, India.

           Submitted Jun 21,  Rev Jun 28, Publish Jul 19.  Review Report, Data

 


2012 (1)

 

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      In silico novel MYB transcription factor [EaMYB2R] from Erianthus arundinaceus.
        Kulkarni P, Devarumath RM., 13(1):167-183, 2012. 

           Molecular Biology & Genetic Engineering Division, Vasantdada Sugar Institute, Manjari (Bk), Tal. Haveli and Department of Biotechnology, University of Pune, Maharashtra, India

           Submitted June 11,  Rev Jun13, Publish Jul 12.  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      In Silico characterization of glycosidase protein sequences from bacterial sources.     Comment on and/or review this paper
        Yadav V, Yadav KDS., 13(1):156-166, 2012. 

           Department of Chemistry, Deen Dayal Upadhyaya Gorakhpur University, Gorakhpur. India

           Submitted Apr 14,  Rev Jun3, Publish Jun 28.  Review Report, Data

                      

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      In silico analysis of rice and Arabidopsis spp. PIP genes.
        Ramole S, Chouhan U., 13(1):144-155, 2012.       

          Department(s) of Bioinformatics and Mathematics, MANIT, Bhopal MP, India

           Submitted Mar 26,  Rev May 18, Publish Jun 12,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Pharmacophore model of Dengue virus RNA dependent RNA polymerase  
        Shree T, Asnet JM, Kumar R, Mohan T, Shenbagarathai R., 13 (1):130-143, 2012       

           PG and Reserach Department of Zoology and Biotechnology, Lady Doak College, Narimedu,   Madurai, Tamilnadu, Institute of Computational Biology, Bangalore, Schrödinger,

           Bangalore and Department of Biotechnology, New Delhi, India.

           Submitted Apr 16,  Rev May 10, Publish May 28,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       In silico analysis and homology model of legume antioxidant proteins.   Comment on and/or review this paper
        Sarika J, Iquebal MA, Rai A., 13 (1):120-129, 2012       

           Centre for Agricultural Bioinformatics, Division of Biometrics and Statistical Modelling, Indian Agricultural Statistics Research Institute, PUSA, New Delhi, India.

           Submitted Feb 18,  Rev May 3, Publish May 21  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       EST secretome analysis of Radopholus similis nematode.
        Sangeetha K, Babu RO, Eapen SJ., 13(1):103-119, 2012       

           Bioinformatics Center,  Division of crop protection, Indian Institute of Spices Research, Calicut, Kerala, India.

           Submitted Mar 26,  Rev May 3, Publish May 18,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Homology model of sugarcane soluble acid invertase
        Hemanthkumar M, Umamaheswari A., 13(1):93-102, 2012       

           Agricultural Research Station, ANGR Agricultural University, Perumallapalle, SVIMS Bioinformatics Centre, Department of Bioinformatics, SVIMS University, Tirupati.

           Submitted Jan 23,  Rev Apr 4, Publish April 30,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Insights to sequences of PCR amplified pectin lyase genes from different fungal strains
        Dubey AK, Yadav S, Anand G, Bisht NC, Yadav D., 13(1):80-92, 2012
           Department of Biotechnology, D.D.U Gorakhpur University, Gorakhpur (U.P.) National Institute of Plant Genome Research, JNU Campus, New Delhi,India. 

           Submitted Dec11,  Rev Jan 28, Publish March 28,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Molecular modelling and docking of Brugia malayi glutathione reductase
        Yadav SS, Singh VK, Liebau E, Rathaur S., 13(1):59-79, 2012
           Centre for Bioinformatics, Faculty of Science, Banaras Hindu University, Varanasi, India and Westfalische Wilhelms-Uinversitat, Institute of Animal Physiology, Department of Molecular Physiology,  

           Hindenburgplatz-55, Muenster, Germany.
           Submitted Mar 12,  Rev Mar 14, Publish March 28,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       In silico homology model of mutated PTEN protein inducing meningioma
        Kaur J, Mohan A, Kumar S, Pallavi A, Malakar K., 13(1):50-58, 2012
           BCS In silico Biology, National Bureau of Fish Genetic Resources, Lucknow U. P., India.
           Submitted Feb 28,  Rev Mar 4, Publish March 18,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Simulation of riboflavin synthase in Eremothecium gossypii  conversion of 6,7-dimethyl-8-ribityllumazine to riboflavin
        Idrus S, Tambunan USF., 13(1):41-49, 2012
           Departement of Chemistry, Faculty of Mathematics and Science, University of Indonesia,  Depok 16424 Indonesia.
           Submitted Nov 18,  Rev Feb 12, Publish Feb 28,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Model and molecular docking substrate stabilization of Microsporum canis keratinase
        Karthik MVK, Syed H, Goswami T, Shukla P., 13(1):33-40, 2012
          
Birla Institute of Technology, Mesra, Jharkhand, India.
           Submitted No 18,  Rev Feb 12, Publish Feb 28,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       In silico analysis of bacterial DNA polymerases and molecular phylogeny.
        Sridhar M, Manjunath A, Bala Chauhan J, Zameer F., 13(1):27-32, 2012
          
Department of Biotechnology and Microbiology, Mahajana Life Science Research Centre, Pooja Bhagavat Memorial Mahajana Post Graduate Centre, K.R.S Road, Metagalli, Mysore,. Karnataka, India.
           Submitted Dec 15,  Rev Jan 13, Publish Feb 8,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       In silico horizontal gene transfer and functional motif in GshF protein of Listeria monocytogenes
        Srinivas V, Kreft J, Gopal S., 13(1):14-26, 2012
          
Department of Microbiology, University of Mysore, Manasagangotri, Mysore , Karnataka, Indian and Department of Microbiology, Biocenter, University of Wuerzburg, 97074 Wuerzburg, Germany

           Submitted Dec 15,  Rev Jan 13, Publish Feb 8,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       In Silico analysis of consensus QTL for drought resistance in rice (Oryza Sativa L.)     

        Pradeepa N, Shanmuga PP, Jebakumar Prince KS, Kavitha S, Poornima R, Prabhakar MS . Chandra Babu R., 13(1):1-13, 2012
          
Department of Plant Molecular Biology and Bioinformatics, Centre for Plant Molecular Biology and biotechnology, Tamil Nadu Agricultural University, Coimbatore, India

           Submitted Dec 8,  Rev Dec 9, Publish Jan 2,  Review Report, Data


2011 (2)

 

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       In Silico substrate specificity in bmgt1 and bmgt2 genes of Bacopa monniera glycosyltransferases      

        Sharma R, Ruby Zargar, Khan BM, Suresh CG., 12(2):413-430, 2011
          
Division of Biochemical Sciences and Plant Tissue Culture Division, National Chemical Laboratory, Pune, India.

           Submitted Sep 12,  Rev Nov 1, Publish Dec 15,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       In Silico model of Homo sapiens Nectin-4: a novel anticancer drug target.       

        Das D, Preet R, Mohapatra P, Satapathy SR, Kundu CN., 12(2):395-412, 2011
          
KIIT School of Biotechnology, KIIT University, Campus-11, Patia, Bhubaneswar, Orissa, India.

           Submitted Jun 23,  Rev Oct 13, Publish Nov 27,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Prediction of 3D model of nuclear export protein of influenza A virus.       

        Khewariya D., 12(2):386-393, 2011
          
Devi Ahilya University Indore, India

           Submitted Oct 16,  Rev Oct 18, Publish Nov 27,  Review Report, Data

  

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Evaluation of the severity of asthma by using an artificial neural network       

        Kumar A, Singh S, Vennila JJ., 12(2):379-385, 2011
           Department of Bioinformatics, Karunya University, Karunya Nagar, Coimbatore, Tamil Nadu, India
           Submitted Oct 27,  Rev Oct 18, Publish Nov 23,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       In silico T cell antigens from proteome of H1N2 swine influenza A virus       

        Verma SK, Singh Yadav SK, Kumar A., 12(2):371-378, 2011
           Department of Biotechnology, Institute of Biomedical Education and Research, Mangalayatan University,   Aligarh (U.P), India
           Submitted Oct 17,  Rev Oct 13, Publish Nov 13,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Analysis of inhibitory activity of 2, 4-diamino-5-methyl-5-deazapteridine (DMDP) derivatives against recombinant human dihydrofolate reductase.      

        Singh S, Kumar A, Vennila JJ., 12(2):357-370, 2011
           Department of Bioinformatics, School of Biotechnology and Health Sciences, Karunya  University, Coimbatore, Tamil Nadu, India.
           Submitted Sep 12,  Rev Oct 10, Publish Nov 3,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Model of a Zn2+ binding domain of peptidase M48 Ste24p from Cyanothece Sp. (Strain PCC 7822)          

        Patra MC, Rath SN, Bhoi GK, Pradhan SK., 12(2):345-356, 2011
           Department of Bioinformatics, Orissa University of Agriculture and Technology, Bhubaneswar, Orissa, India
           Submitted Oct 6,  Rev Oct 10, Publish Oct 27,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Epigenomic regulation of genes involved in anti-stress mechanism in Arabidopsis thaliana using high-throughput genomic data         

        Singh N, Mishra H, Misra K., 12(2):329-344, 2011
           Division of Bioinformatics and allied sciences, Indian Institute of Information Technology, Allahabad, India

           Submitted Sep 4,  Rev Sep 18, Publish Oct 27,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Genetic diversity of hatchery stocks of Macrobrachiumrosenbergii assessed by microsatellite DNA,           

           Suresh E, Reddy AK, Krishna G, Chaudhari A, Sharma R, Babu PG., 12(2):323-328, 2011 

           Division of Fish Genetics and Biotechnology, Central Institute of Fisheries Education, Indian Council of Agricultural Research, Versova, Mumbai, India.  

           Submitted Aug 16,  Rev Sep 18, Publish Oct 24,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Computational analysis of K-Hefutoxin interaction with Kv channels and L-carnitine for molecule against scorpion envenomation.            

           Umamaheswari A, Pradhan D, Priyadarshini V, Munikumar M, Rao S., 12(2):304-322, 2011 

           SVIMS Bioinformatics Centre, Department of Biochemistry SVIMS University, Tirupati, India

           Submitted Jul 5,  Rev Jul 15, Publish Sep 24,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Toxicity of  butachlor assessed by molecular docking to NusB and GroES protein.            

           Kumari N, Singh VK, Narayan OP, Rai LC.,  12(2):289-303, 2011 

           Molecular Biology Section, Centre for Bioinformatics, Centre of Advanced Study in Botany, Banaras Hindu University, Varanasi, India.

           Submitted Mar 23,  Rev Jun 15, Publish August 27,  Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif       Neighbour joining microarray data clustering algorithm                

           Rajendran B, Murugan V, Premnath K,  Gomez P.,  12(2):274-288, 2011 

           Department of Bioinformatics, Karunya University,  India.

           Submitted Feb 3,  Rev Jun 5, Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Phylogenetic analysis of mitochondrial 16s rRNA and NADH Dehydrogenase genes of Takifugu (Pisces: Tetraodontiformes: Tetraodontid).                

          Jagannath M, Umadevi K, Subhalaxmi N.,  12(2):255-273, 2011 

           DBT – BIF Programme, Department of Marine Living Resources, Andhra University, Visakhapatnam,  India.

           Submitted Jan 11,  Rev Mar 15, Publish July 17 Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      In-silico inhibition of telomerase associated proteins.                

          Jyoti P, Vidyarthi AS, Shankaracharya M.,  12(2):243-254, 2011 

           Department of Biotechnology, Birla Institute of Technology, Mesra, Ranchi, India.

           Submitted Feb 16,  Rev Mar 8, Publish July 7 Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      A least squares method to determine reticulation in eight grass plastomes                

          Mathur R, Adlakha N., 12(2):230-242, 2011 

           Department of Applied Mathematics & Humanities, Sardar Vallabhbhai National Institute of Technology, Surat, Gujarat, India.

           Submitted Mar 12,  Rev May 29, Publish July 3 Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Homology modeling and active site analysis of MurB Reductase: A potential drug target of Legionella pneumophila.               

          Priyadarshini V, Pradhan D, Munikumar M, Umamaheswari A., 12(2):217-229, 2011 

           SVIMS Bioinformatics Centre, Department of Bioinformatics, SVIMS University, Tirupati, India.

           Submitted Mar 11,  Rev May 27, Publish July 3 Review Report, Data

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Comparative modeling studies of a hypothetical protein YHR105W from S.Cerevisae genome.               

          Rathankar N, Nagendra HG., 12(2):207-216, 2011 

           School of Bioengineering, Department of Bioinformatics, SRM University, Kattankulathur campus, Hennai and Dept. of Biotechnology, Sir M. Visvesvaraya Institute of Technology, Krishnadevarayanagar,  

           Unasamaranahalli,   Bangalore, India.

           Submitted Feb 18,  Rev Mar 12. Publish June 28 Review Report, Data File

 


2011 (1)

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Computational analysis of diversity coding for 3-KetoAcyl-Co A synthase 20 for fatty acid elongation pathway in plants.               

          Grover M, Kaur S., 12(1):198-206, 2011 

           National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi , India
 
         Submitted Mar 5,  Rev May 12. Publish June 28 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      In silico identification of residues for anoxia tolerance across species                

          Sahu TK, Rao AR, Alka B, Behera BK, Mohapatra T., 12(1):175-197, 2011 

           Indian Agricultural Statistics Research Institute, New Delhi, Central Inland Fishery Research Institute, Barrackpore, Kolkata, National Research Centre on Plant Biotechnology, New Delhi, India
 
         Submitted May 3,  Rev May 12. Publish June 27 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Detection and classification of two-component osmoregulatory systems.                

          Srividhya KV, Krishnaswamy S., 12(1):167-174, 2011 

           Centre of Excellence in Bioinformatics, School of Biotechnology, Madurai Kamaraj University, Madurai-625021, Tamilnadu, India
 
         Submitted Mar 26,  Rev May 6. Publish June 12 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Identification of potential drug targets in M1 strain of Streptococcus pyogenes by differential genomics                

          Trivedi N, Sarangi AN, Naik S, Aggarwal R., 12(1):149-166, 2011 

           Biomedical Informatics Centre, School of Telemedicine and Biomedical Informatics, Sanjay Gandhi Postgraduate Institute of Medical Sciences,  Lucknow, India

          Submitted Oct 16,  Rev May 8. Publish June 4 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Bio-computational interaction analysis of acetylcholinesterase(AChE) toxin from Dendroaspis Polylepis with human hippocampal AChE.          

          Sahu TK, Patra MC,, 12(1):139-148, 2011 

          Indian Agricultural Statistics Research Institute, New Delhi and PG Department of Bioinformatics, Orissa University of Agriculture and Technology, Bhubaneswar, Orissa, India  

          Submitted Apr 16,  Rev May 1. Publish May 28 Review Report 

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Algorithm to detect Denial of Service (DDoS) in Gnutella hybrid P2P network mapped to artificial immune system          

          Uddin M, Rahman AA., 12(1):115-138, 2011 

          Department of Information Systems, Universiti Teknologi Malaysia Johor Malaysia. 

          Submitted Apr 20,  Rev Apr 23. Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Molecular docking for substrate stabilization in Thermomyces lanuginosus  11 xylanases.          

          Karthik MVK, Shrivastava S, Shukla P., 12(1):107-114, 2011 

          Birla Institute of Technology, Mesra, Ranchi, Jharkhand, India 

          Submitted Nov 15,  Rev Feb 16, Publish May 17 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Virtual screening of human MEK1 protein inhibitors catechin and gw8510.          

          Potluri V, Pradhan D, Umamaheswari A., 12(1):98-106, 2011 

          SVIMS Bioinformatics Centre, Department of Bioinformatics, SVIMS University, Tirupati, India     

          Submitted Nov 15,  Rev Feb 16, Publish May 17 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Self organizing  algorithm for multiple sequence alignment          

          Amouda V, Buvaneswari S, Kuppuswami S., 12(1):74-84, 2011 

          Centre for Bioinformatics, Department of Computer Science R.V. Nagar, Kalapet, Pondicherry University, India     

          Submitted Nov 11,  Rev Feb 16, Publish May 7 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Partial sequence clone of canine mammary tumor metalloproteinase MMP11 catalytic domain     

          Sunil Kumar BV, Kataria M, Kumar R, Kumar KA, Vishwanatha Reddy AP., 12(1):66-73, 2011 

          Enzymology lab., Division of Biochemistry, Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

          Submitted Apr 22,  Rev Feb 15, Publish Apr 28 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Inhibition of Farnesyl pyrophosphate by allosteric site drug binding      

          Kumar S, Pathak J, Asha PJ, Bandopadhyay R., 12(1):57-65, 2011 

          Department of Biotechnology, Birla Institute of Technology, Mesra, Ranchi, Jharkhand, India

          Submitted Feb 12,  Rev Feb 15, Publish Apr 27 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      In silico epitope rabies virus vaccine.   

          Tomar NR, Marla SS, Chandra R, Kumar R, Kumar A., 12 (1): 46-52, 2011. 

          Department(s) of Molecular Biology and Genetic Engineering, G.B.Pant university of Agriculture and Technology and Veterinary Microbiology, G. B. Pant University of Agriculture and Technology, Pantanagar-  

          Animal Biotechnology section, Central Sheep and Wool Research Institute, Avikanagar, India

          Submitted Apr 3,  Rev May 6, Dec 3, Publish Jan 8 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      In Silico mining of single nucleotide polymorphisms in expressed sequence tags dataset of Allium cepa L.   

          Radhika V, Reddy DCL, Bhardwaj A, Aswath C., 12 (1): 34-45, 2011

          Division of Biotechnology, Indian Institute of Horticultural Research, Hessaraghatta Lake, Bangalore , India.

          Submitted Apr 3,  Rev May 6, Dec 3, Publish Jan 8 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Comparative evolutionary analysis of metallo-β-lactamases with reference to NDM1        

          Odedra D, Mallick M, Vidyarthi AS, Shankaracharya D., 12 (1): 18-33, 2011. 

          Department of Biotechnology, Birla Institute of Technology, Mesra, Ranchi, India

          Submitted Nov 23,  Rev Dec 12, Publish Feb 8 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Prediction of mutagenicity of compounds by Support Vector Machine        

          Sharma A, Kumar R, Varadwaj P., 12 (1): 9-17, 2011. 

          Department of Bioinformatics, Indian Institute of Information Technology Allahabad,Deoghat, Jhalwa, Allahabad, Amity Institute of Biotechnology (AIB), Amity University Uttar Pradesh, Lucknow, Uttar Pradesh, India

          Submitted Sep 5,  Rev Oct 8, , Publish Jan 7 Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Support vector machine classification and prediction of lyases.        

          Lavanya Rishishwar L, Mishra N, Pant B, Pant K, Pardasani KR, 12 (1): 1-8, 2011. 

          Department of Bioinformatics, Maulana Azad National Institute of Technology, Bhopal, India  

          Submitted Oct 17  Rev May 6, Dec 3, Publish Jan 8 Review Report

 


 2010 (2)

 

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Molecular identification of Pinctada oysters by mitochondrial DNA analysis.   

          Yassien MH, Obata M, Iman MK, Komaru A.,11 (2): 317-326, 2010. 

          National Institute of Oceanography and Fisheries and National Research Center, Egypt, and Faculty of Bioresources, Mie University, Tsu City, Mie Prefecture, Japan.

          Submitted Oct 3,  Rev Oct 6,  Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Model ligand-binding site of 2-Amino-5-chlorophenol 1,6-dioxygenase in Comamonas sp. CNB-1.                              

          Monika K, Muralidhara Rao D,  Anuraj N, Yadav M, Nageswara Rao N, Venkateswarlu K., 11 (2): 302-316, 2010. 

          Department of Microbiology/Biotechnology, Sri Krishnadevaraya University,  Bioinformatics Research Laboratory, Eminent Biosciences, Indore, Department of Chemistry, MVR College of Engineering and Technology, India.

          Submitted Aug 24,  Rev Sep 6,  Publish Nov 3, Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      In silico analysis of α-L-rhamnosidase protein sequences from different source organisms.    

          Yadav V, Yadav D, Singh Yadav KD., 11 (2): 293-301, 2010.. 

          Department(s) of Chemistry and Biotechnology, DDU Gorakhpur University, Gorakhpur, India.

          Submitted July 31,  Rev Sep 6,  Publish Nov 3, Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Building a topological inference with qualitative criteria to predict the structural family of a protein sequence.      

          Gaci O., 11 (2): 11 (2): 282-292, 2010.. 

          Le Havre University,  Le Havre – France

          Submitted Dec 21,  Rev Aug 9,  Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      Predicted 3D structure, active site and ligand docking of serine acetyltransferase, a drug target for Entamoeba histolytica.  

          Agarwal SM, Raghav D, Kumar A., 11 (2): 11 (2): 264-281, 2010.. 

          Bioinformatics Division, Institute of Cytology and Preventive Oncology, Uttar Pradesh, India
          Submitted Jun 28,  Rev Sep 4,  Publish Oct 23  Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Target sites for microRNA in pancreatic islets in type 2 Diabetes mellitus associated genes.     
         
 Pal-Bhadra M, Arora N, Santosh S, Ray P, Banerjee AK, Sripathi VR*, Murty USN, Bhadra Uci O., 11 (2): 11 (2): 245-263, 2010.

          Centre for Chemical Biology and Biology Division, Indian Institute of Chemical Technolo gy (IICT), and Functional Genomics and Gene Silencing Group, Centre for Cellular and Molecular Biology (CCMB), Hyderabad, India.NRES,  

          *Department  of Natural Resources and Environmental Sciences. Alabama A & M University, Normal, USA.
          Submitted Dec 21,  Rev Jul 18,  Publish Oct 3  Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Analysis of array CGH data for the detection of single-cell chromosomal imbalances.   
          Ampe M, Verbeke G, Vanneste E, Vermeesch JR., 11 (2): 224-244, 2010. 

          Interuniversity Institute for Biostatistics and statistical Bioinformatics, Katholieke Universiteit Leuven and Universiteit Hasselt and, Centre for Human Genetics (CME), Katholieke Universiteit Leuven, Belgium
          Submitted Jul 16,  Rev Jul 18,  Publish Aug 24  Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif      XML storage model preserves relational integrity constants and complex types.    
          Kasri LA, Chenfour N., 11 (2): 217-223, 2010

          Laboratoire Informatique et Nouvelles Technologies de l’information, University Sidi Mohamed Ben Abdellah (USMBA), et Faculté des Sciences, Dhar el mehraz, Fez, Morocco.
          Submitted May 17,  Rev April 15,  Publish Oct 7  Review Report

 

http://users.comcen.com.au/Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Inferring the kinetic constants of cyclin-triggered expression of Cdc20 gene in eukaryotic cell cycle.   
          Lecca P, Palmisano A, Ihekwaba AEC., 11 (2): 177-216, 2010

          The Microsoft Research - University of Trento Centre for Computational and Systems Biology, 38123 Povo (Trento), Italy
          Submitted April 10,  Rev April 12,  Publish May 25  Review Report

 


2010 (1)

 

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Full-length DNA cloning, sequence analysis and transmembrane topology modelling of putative Trypanosoma brucei rhodesiense oligosaccharyl transferase (TbOST I).    
          Baticados WN, Inoue N, Sugimoto C, Nagasawa H, Baticados AM., 11 (1): 162-176, 2010

          College of Veterinary Medicine,University of the Philippines Los Baños, Laguna; National Research Center for Protozoan Diseases, Obihiro University of Agriculture and Veterinary Medicine,  Obihiro, Hokkaido 8555,  Japan and

          Laboratory of Infectious Diseases,  Research Center for Zoonosis Control, Hokkaido University N18-W9, Kita-ku, Sapporo, Hokkaido 060-0818, Japan
         
Submitted April 10,  Rev April 12,  Publish May 25  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Statistical approach to assign functional regulators in gene expression compendia.      

          Anyiawung FC,  Verbeke G  Valkenborg D,  Zhao H, Marchal K, Engelen K., 11 (1): 145-161, 2010

          Interuniversity Institute for Biostatistics and statistical Bioinformatics, Katholieke Universiteit Leuven, Kapucijnenvoer 35, Blok D, bus 7001, B3000 Leuven, Interuniversity Institute for Biostatistics and statistical

          Bioinformatics, Universiteit Hasselt, Agoralaan 1, B3590 Diepenbeek, Department of Microbial and Molecular Systems, Katholieke Universiteit Leuven, Leuven, Flemish Institute for Technological Research (VITO), 

          Boeretang 200, B2400, Mol, Belgium.
         
Submitted April 4,  Rev April 6,  Publish May 15  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Structural model of the mammalian target of rapamycin (mTOR) kinase domain.         

          Tobak A, Arora S, Welsh WJ., 11 (1): 128-144, 2010

          Department of Pharmacology, University of Medicine & Dentistry of New Jersey-Robert Wood Johnson Medical School (UMDNJ-WJMS) & Informatics Institute of UMDNJ,

          Piscataway and 2 NJ Center for Science,  Technology and Mathematics, Kean University, Union, NJ 07083, USA.
         
Submitted March 28,  Rev April 3,  Publish May 7  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Selection and evaluation of gene-specific biomarkers in pre-clinical and clinical microarray experiments.     

          Lin D, Shkedy Z, Molenberghs G, Talloen W, Goelhmann HWH, Bijnens L., 11 (1): 106-127, 2010

          BioStat, Universiteit Hasselt and Katholieke Universiteit Leuven, Janssen, Beerse, Belgium.
         
Submitted March 28,  Rev April 3,  Publish May 3  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Functional and comparative genomics studies on Carboxydothermus hydrogenoformans specific to CO-metabolism and hydrogen production.     

          Rajadurai  CP, Kumar GP., 11 (1): 90-105, 2010

          Bioinformatics Lab, AU-KBC Research Centre, MIT Campus, Anna University Chennai, Chromepet, Chennai 600 044.India.
         
Submitted Nov 13,  Rev Feb 20,  Publish Apr 5  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Brain tumor biomarker identification via differential gene expression analysis of microarray data using CGAP.    

          Ravichandran S, Jeyakumar N., 11 (1): 83-89, 2010

          Data Mining and Text Mining Laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, India. 
         
Submitted Dec 17,  Rev Feb 2,  Publish Apr 2  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     A Linear Programming Approach to Study Phylogenetic networks in Honeybee.      
          Chouhan U, Pasandi KR., 11 (1): 72-82, 2010

          Department of Mathematics,MANIT, Bhopal, India-462051
         
Submitted Dec 10,  Rev Feb 22,  Publish Mar 30  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     In silico identification of functions enduring horizontal gene transfer in archaea: a comparative approach.      
          Tamanna A, Nandi T., 11 (1): 59-71, 2010

          Department of Biotechnology, Jaypee Institute of Information Technology University, Noida (UP) 201307, India.
         
Submitted Oct 16,  Rev Feb 24,  Publish Mar 30  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Identification & HLA distribution analysis of CD4+ epitope-based vaccine candidates for H1N1 Swine Influenza.    
          Sarangi AN, Rathi B, Trivedi N, Gupta S., 11 (1): 47-58, 2010

          ¹Biomedical Informatics Centre, Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow 226014, India
         
Submitted Aug 19,  Rev Feb 23,  Publish Mar 23  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Phylogenetic Clustering and Comparative Homology Modelling of Nitrobenzene Nitroreductase from Pseudomonas pseudoalcaligenes JS45 and Comamonas sp. CNB-1.      
          Monika K, Dowlathabad MR, Spain JC, Kadiyala V., 11 (1): 38-46, 2010

          Department of Microbiology 2Department of Biotechnology, Sri Krishnadevaraya University, Anantapur India and School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
         
Submitted May 19,  Rev Dec14,  Publish Mar 23  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     csPCR: A computational tool for the simulation of the Polymerase Chain Reaction.     
          Dasu S, Williams A, Fofanov Y, Putonti C., 11 (1): 34-37, 2010

          Department(s) of Computer Science and Biology, University of Houston, Department(s) of Biology, Bioinformatics and Computer Science, Loyola University Chicago, USA 
         
Submitted Jan 9,  Rev Jan14,  Publish Mar 18  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Structural and docking analysis of HIV-1 integrase and Transportin-SR2 interaction: Is this a more general and specific route for retroviral nuclear import and its regulation? .   
          Shityakov S, Rethwilm A, Dandekar T., 11 (1): 19-33, 2010

          Institute for Virology and Immunobiology, University of Wurzburg, Versbacher Str. 7, 97078 Wurzburg, Germany Dept. of Bioinformatics, Biocenter University of Wurzburg, 97074 Wurzburg,Germany,
         
Submitted Jan 2,  Rev Jun 7,  Publish Mar 18  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Beyond single p-value cut-offs: Methods to improve decision making in GO enrichment analysis of microarray experiments.    

          De Haan JR, Wehrens R, Bauerschmidt S , Van Schaik RC, Piek E, Buydens LMC., 11 (1): 1-18, 2010

          Institute for Molecules and Materials, Analytical Chemistry, Department of Applied Biology, Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University  

          Nijmegen and Schering-Plough, The Netherlands.
         
Submitted May 18,  Rev Jun 9, re-submitted Jan 7, Publish Feb28  Review Report


2009 (2)

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Analysis of clustered microRNA in biological pathways

          Mookherjee S, Sinha M, Mukhopadhyay S, Bhattacharyya NP, Mohanty PK., 10 (2): 280-296, 2009

          Centre for Applied Mathematics and Computational Science, 2Structural Genomics Section, Crystallography and Molecular Biology Division, Theoretical Condensed Matter Physics Division, Saha Institute of Nuclear

          Physics,1/AF Bidhan Nagar, Kolkata, 700064 India.
         
Submitted Oct 8,  Rev Oct 16, Publish Nov 27  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     In Silico analysis of translation initiation sites from P. falciparum
 
         Patakottu BR, Mamidipally C, Patankar S, Noronha S., 10 (2): 259-279, 2009

          Department of Biosciences and Bioengineering, and Chemical Engineering, Indian Institute of Technology, Mumbai, India.
         
Submitted Oct 5,  Rev Oct 13, Publish Nov 17  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Effect of iron deprivation on expression of sphingomyelase in pathogenic serovar Lai
 
         Velineni S, Ramadevi S, Asuthkar S, Sritharan M., 10 (2): 241-258, 2009

          Department of Animal Sciences, University of Hyd erabad, Hyderabad, India; Informatics Division, GVK Biosciences Pvt Ltd, Hyderabad, India.
         
Submitted Jul 10,  Rev Oct 3, Publish Oct 30  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     An algorithm for edit distance of genome rearrangement based on seriate-block mutation
 
         Zhang S, Lai J ., 10 (2): 233-240, 2009

          Department of Computer Science, Guangzhou Maritime College and School of Information Science and Technology, Sun Yat-sen University, Guangzhou, P.R. China.
         
Submitted Sep 16,  Rev Oct 1, Publish Oct 28  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Single nucleotide polymorphisms (SNPs) and indels in expressed sequence tag libraries of turmeric (Curcuma longa L.)
 
         Chandrasekar A, Riju A, Sithara K, Anoop S , Santhosh J Eapen ., 10 (2): 224-232, 2009

          Bioinformatics Centre, Indian Institute of Spices Research, Marikunnu P.O, Calicut – 673012, Kerala, India

          Submitted Jun 18,  Sep 15, Publish Oct 15  Review Report

 

http://users.comcen.com.au/../../../../../../Documents%20and%20Settings/Vincent/My%20Documents/htdocs/ojb/MAIN2004/grrnd06.gif     Prolyzer: A wireless application for physico-chemical analysis of protein sequences
          Pabla SS, Pabla SS, Sajja SP., 10 (2): 218-223, 2009

          Department of Computer Science, Sardar Patel University, India

          Submitted Nov 28,  Reviewed Aug 15, Publish Sept 15  Review Report

 

     GENOVA: A rapid genome vizualization and functional genomics software applied to strain comparisons in Staphylococcus aureus
          Liang C, Wolz C, Herbert S, Bernhardt J, Engelmann S, Hecker M, Götz F, Dandekar T., 10 (2): 201-217, 2009

          Department of Bioinformatics, University of Würzburg Am Hubland,  Würzburg , Institute of Medical Microbiology and Hygiene, Clinical University of Tübingen,  Department of Microbial  Genetics, University of 

          Tübingen,  Institute of Microbiology,  University of Greifswald, EMBL,  Heidelberg, Germany.

          Submitted Jul 17,  Reviewed Jul 29, Publish August 15  Review Report
 

     Identification of active gene modules during pancreatic development
         
Gao S, Wang X., 10 (2):191-200, 2009
          Department of Physics & the Comprehensive Diabetes Center, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.      

          Submitted Jul 18,  Reviewed Jul 22, Publish August 10  Review Report

     Use of computational and structural bioinformatic strategies in controlling fusarium wilt in cotton
          
Prabhakaran S, Srividya V, Bharathi N, Jayakanthan M, Manikanda Boopathi N, 10 (2):180-190, 2009.

          Department of Plant Molecular Biology and Biotechnology, CPMB, Tamil Nadu Agricultural University, Coimbatore 641003, India.
          Submitted Jun 21,  Reviewed Jul 3, Publish July 23  Review Report
 

     Comparative genomic study on context-dependence of CpG mutations:Acceleration effect of 5' T nucleotides and new evidence of strand assymetry in genes       
         
Wang Y, Leung FC., 10 (2): 165-179,  2009.

          School of Biological Sciences and Genome Research Centre, University of Hong Kong, Pokfulam, Hong Kong.
          Submitted Mar 11,  Reviewed May 27, Publish July 1  Review Report   


2009 (1)
 


     DyeML: XML-based format for handling natural organic dyes       
          Aghoutane B, Benslimane R, Chenfour N, Elbannay O, Meknassi M., 10 (1):156-164, 2009
          Laboratoire de Transmission et Traitement de l’information (LTTI), Ecole Supérieure de Technologie and UFR Informatique Avancée, Faculté des sciences Dhar el mehraz, Fez, Morocco.
          Submitted Feb 24,  Reviewed May 22, Publish April 15  Review Report
 

     Designing of drug for removal of methylation from Tcf21 gene in lung cancer       
         
Gupta SK, Singh A, Srivastava M.,
10 (1):149-155, 2009
         
Department of Bioinformatics, UIET, CSJM University and DOEACC center of Bioinformatics, India.
          Submitted Apr 27,  Reviewed May 16, Publish April 15  Review Report
 

     Determination of antioxidant stability in heated mixture of oils by neural network       
         
Valantina R, Neelamegham P
., 10 (1):134-148, 2009
         
Department of Physics and Electrical Engineeering, SASTRA University, Tamilnadu, India.
          Submitted Apr 17,  Reviewed May 16, Publish May 30  Review Report
 

     Towards establishing the molecular function of Pfam Domain DUF294 by sequence analysis and homology modeling       
          Gononesekere NCW, Beaudry S, Tasovsky I
10 (1):125-133, 2009
          Department of Chemistry and Biochemistry and Department of Biology, University of Northern Iowa, Cedar Falls, U.S.A.

          Submitted Apr 23,  Reviewed May 1, revised May 4, Publish May 30  Review Report
 

     Phylogenetic analysis, homology modeling, molecular dynamics and structure based designing of new inhibitors against cinnamyl alcohol dehydrogenase

         (CAD) cloned and sequenced from a leguminous tree subabul (Leucena leucocephala)

          Sekhar NP, Kumar RD, Sirisha VL, Prashant S Kavi Kishor PB 10 (1):103-124, 2009
         
Department of Genetics, Osmania University, Hyderabad, India.
          Submitted Apr 17,  Reviewed Apr 24, Accepted Apr 26, Publish May 30
  Review Report
 

     Prediction of 3- dimensional structure of GL12 of Homo Sapiens          
         
Sreekanth P, Narayan J   10 (1):98-102, 2009 
         
Bioinformatics  Centre, Amity Institute of Biotechnology, Amity UniversityIndia. .
          Submitted Aug 15,  Reviewed March 24, Accepted Mar 26, Publish April 30
  Review Report
 

     In silico identification of small interfering RNA (siRNA) in the putative genes of White Spot Syndrome virus

         Singh V, Somvanshi P   10 (1):93-97, 2009 
         
Bioinformatics CentreBiotech Park, Lucknow, India.
          Submitted Aug 21,  Reviewed March 19, Accepted Mar 20, Publish April 21
  Review Report
 

    Genetic algorithm self-adaptive mutation rate for DNA folding (GASAMR)

         Mezher MA, Khader AT   10 (1):82-92, 2009 
         
School of Engineering and Design,   School of Computer Science, UB8 3PH, West London, UK Brunel University, 11800, Universiti Sains Malaysia, Penang, Malaysia.

          Submitted Feb 1,  Reviewed March 11, Accepted Mar 14, Publish April 18
  Review Report
 

     A statistical method for verification of rareness in DNA sequences using sequence encoding

         Meena K, Menaka K, Sundar TV, Subramanian KR   10 (1):74-81, 2009 
         Departments of Computer Science,  I.T. & Applications and  M.C.A., Shrimati Indira Gandhi College and Postgraduate and Research Department of Physics, National College, India.

          Submitted Nov 1,  Reviewed March 9, Accepted Mar 11, Publish April 15
  Review Report
 

    Multiple contrast test for detecting monotonic dose-relationship and FDR-adjusted confidence intervals for selected parameters in a microarray setting

         Lin D, Shkedy Z, Burzykowski T,  Yekutieli D, De Bondt A, Göhlmann WHH, Talloen W,  Bijnens L, 10 (1):67-73, 2009
            
Hasselt University, I-BioStat, Universitaire Campus, Diepenbeek, Belgium, Department of Statistics and Operation Research, School of Mathematical Sciences, Tel Aviv

         University, Ramat Aviv, Israel,  J&JPRD - Biometrics and Clinical Informatics, Beerse, Belgium..
          Submitted Mar 1,  Reviewed March 9, Accepted Mar 11, Publish April 2
  Review Report
 

    Prediction 0f 3-dimensional structure of ORF3 protein of genotype 1 hepatitis E virus

         Rathi B, Naik S, Sarangi AN, Aggarwal R, 10 (1):60-66, 2009
             
Biomedical Informatics Centre, Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow 226014, India
.
          Submitted Jan 6,  Reviewed March 6, Accepted Mar 11, Publish April 2
 
Review Report

 

    A systematic approach to understanding E. coli responses to oxygen: from raw microarray data to pathways and published abstracts

         Maleki-Dizaji S, Holcombe M, Rolfe MD,  Fisher P  Green J,  Poole RK,   Graham AI,  SYSMO-SUMO consortium, 10 (1):51-59, 2009

              Department of Computer Science, The University of SheffieldSheffield S1 4DP, United Kingdom. Department of Molecular Biology and Biotechnology, The University of Sheffield , Sheffield S10 2TN,

              United Kingdom.  Department of  Computer Science, The  University of Manchester, Manchester M13 9PL, United Kingdom.
          Submitted Feb 13,  Reviewed Feb 15, Accepted Feb 16, Publish March 3
 
Review Report

 

    In silico identification of tandem inter/intra-generic genetic elements (TIGE) using a random nucleotide generating Perl program: A potential approach for

         locating structure-function regions of recently sequenced genomes

         Jha PK, Stashenko P, 10 (1):40-50, 2009

         Division of Cytokine Biology, The Forsyth Institute, Harvard medical School Affiliate in Oral and Craniofacial Science, Boston, Massachussets, USA

         Submitted Jan 23,  Reviewed Jan 29, Accepted Feb 1, Publish Feb 15  Review Report


    Derivation of a protein marker from  heat denatured protein aggregate

         Lahiri T, Mishra H, Kumar U, Misra K, 10 (1):29-39, 2009

              Division of Bioinformatics and Allied Sciences, Indian Institute of Information technology, Allahabad, India

         Submitted Sep 27,   reviewed Jan 15, accepted Jan 15, publish Feb 15  Review Report

 

    Identification of potential targets and lead molecules for designing inhibitory drugs against Chlamydophila pneumoniae

         Reddy EHSatpathy GR, 10 (1): 14-28, 2009

              Department of Biotechnology and Medical Engineering, National Insitute of Technology, Rourkela-769008, India.

        Submitted Nov 28,   reviewed Jan 5, accepted Jan 10, published Jan 30  Review Report

 

    Homology modelling, molecular dynamics and docking studies of human GLUT5 protein involved in intestinal transport

         Padmavathi GV, Nataraj Sekhar P, Saralakumari D 10 (1):1-13, 2009

       Department of Biochemistry, Sri Krishnadevaraya University, Anantapur,  India, and Katholic University, (leuven, Belgium

          Submitted Dec 3,   reviewed Dec 23,  Accepted Jan 4, published Jan 30  Review Report


2008 (2)

 

 

    In silico analysis of PCR amplified DOF (DNA binding with one finger) transcription factor domain and cloned genes from cereals and millets

          Kushwaha H, Gupta N, Singh VK, Kumar A, Yadav D  9 (2):130-145, 2008

          Department of Molecular Biology and Genetic Engineering, College of Basic Sciences and Humanities, G.B. Pant University of Agriculture and Technology,

          Pantnagar (UttaraKhand), India

          Submitted Jul29,   reviewed Sep 1,  accepted Nov 25, published Dec 30  Review Report

 

    MOTIFA (Motif Analizer) examination of interregional and intraregional distribution of short DNA motifs

          Sucaet Y, Magrath9 (2):121-129, 2008

          Biological and Environmental Science, Troy University, Troy, AL 36082, USA

          Submitted October 3,   reviewed October 17,  accepted October 23, published October 30  Review Report

     Homology based 3D-structure modeling of glucose specific Sesbania stem lectin

          Saxena S, Das HR, Das D, Biswas9 (2):113-120, 2008

          Proteomics and Structural Biology Laboratory, Institute of Genomics and Integrative Biology, Delhi University Campus, Mall Road 110007, India

          Submitted August 2,   reviewed August 20,  accepted August 21, published August 28  Review Report

 

     CateGOrizer: A web-based program to batch analyze gene ontology classification categories

          Hu Zhi-Liang, Bao J, Reecy JM  9 (2):108-112, 2008

          Department of Animal Science, Iowa State University, 2255 Kildee Hall and Department of Computer Science, Iowa State University, 226 Atanasoff Hall, Ames, Iowa 50011-3150, USA

          Submitted August 2,   Reviewed August 20,  Accepted August 21, published August 28  Review Report

 

    In-silico study on interaction of active binding sites of proteins with calcium oxalate monohydrate

          Bijarnia RK, Kaur T, Naik PK, Singla SK, Tandon C  9 (2):92-107, 2008

          Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan and Department of Biochemistry, Panjab University, India

          Submitted February 26,   Reviewed May 23,  Accepted August 10, publish August 25 Review Report


2008 (1)

 

 

     Identification of SSR-ESTs corresponding to alkaloid, phenylpropanoid and terpenoid biosynthesis in MAP's

          Tripathy KP, Roy S, Khan F Shasany AK, Sharma A, Khanuja SPS  9 (1):78-91, 2008

          Bioinformatics and In Silico Biology Division, Central Institute of Medicinal and Aromatic Plants (CSIR), Lucknow, India

          Submitted June 7,   Reviewed May 23, Accepted July 10, publish July 26 Review Report

 

     Prediction of the putative function of mouse WDR13 protein

          Murthy BSN,  Pandit MW, Singh L. 9 (1):60-77, 2008

          Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad – 500 007; India

          Submitted March 11   Reviewed May 13, Accepted June 16, publish June 26 Review Report

 

      In silico experiments on a faulty ubiquitin-proteasome system in the pathogenesis of Parkinson's disease

          Lecca P.  9 (1): 30-43, 2008
          The Microsoft Research-University of Trento Centre for Computational and System Biology, Trento, Italy.
       
Submitted March 13   Reviewed March 27, Accepted April 8, publish April 30 Review Reports

 

      A comparison of information on molecular interactions available in full-length publications versus abstracts
         
Mahadevan U, Bhate J, Raghunath A,  Kashyap S, Dey PC, Prakash N, Bhat B, Mol L, Wong, L  9 (1): 21-29, 2008
         
Molecular Connections Pvt. Ltd., Bangalore, India and Institute for Infocomm Research (I2R), Singapore.
          Submitted November 18   Reviewed September 23, Accepted January 17 Review Reports


     
Elucidating the role of CREBBP co-activator in erythroid differentiation by literature mining and analysis

          Iyer J, Raghunath A, Bhate J, Wong L,  9 (1): 12-20, 2008
         
Molecular Connections Pvt. Ltd, Basavanagudi, Bangalore, India, and National Institute of Singapore, Singapore.
          Submitted December 27   Reviewed January 23, Accepted January 25   Review Reports

 

      In silico analysis of P5CS gene evolution in plants

           Kumari A1,  Patade VY, Suprasanna P, 9 (1): 1-11, 2008

           Plant Cell Culture Technology Section,  Nuclear Agriculture & Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400 084. India.
           Submitted August 3   Reviewed August 23, December 16
  Published January 12  Review Reports
     


2007 (2)

 

 

     Molecular evolution of archaeal CRISPR and Cas genes

          Chatterjee R, Dutta A, Chaudhuri K, 8 (2): 189-204, 2007

          Molecular & Human Genetics Division  Indian Institute of Chemical Biology, Jadavpur, Kolkata-700 032, India.

           Submitted October 12   Reviewed November 15   Published November 29  Review Reports


      Structure and function prediction of a hypothetical protein (Q307B9_SPIPL) of Spirulina platensis (Nordstedt) Geitler
         
Lakshmi PTV, Uma Maheswari S, Annamalai A,
8 (2): 179-188, 2007.
         
Phytomatics Laboratory, Department of Bioinformatics, Bharathiar University,  Tamil Nadu, India, and School of Dietetics and Human Nutrition, McGill University,

          Macdonald Campus, Montreal, Quebec, Canada.  
          Submitted August 15   Reviewed August 28   Published September 23
  Review Reports 

 

      Constructing phylogeny from whole genome alignment

          Chan PY, Lam TW, Liu CM, Yiu SM 8 (2) : 165-178, 2007
         
Department of Computer Science, The University of Hong Kong, Hong Kong

          Submitted July 14   Reviewed August 14, 22   Revised August 24  Published August 28  Review Reports

 

      The 3D structure of the Japanese Encephalitis helicase, using homology based molecular modelling techniques

          Vlachakis D, Brancale8 (2) : 154-164, 2007
         
Welsh School of Pharmacy, Cardiff University, King Edward VII Avenue, Cardiff, CF10 3XF, United Kingdom
          Submitted August 2   Reviewed August 5   Revised August 6  Published August 14  Review Reports

 

      Shape-to-String Mapping: A Novel Approach To Clustering Time-Index Biomics Data

          Antoine W, Miernyk JA  8 (2) : 139-153, 2007
          Department of Biochemistry USDA, Agricultural Research Service, Plant Genetics Research Unit and Interdisciplinary Plant Group, University of Missouri, Columbia, USA
          Submitted June 20   Reviewed July 5-6   Revised July 14   Published July 16  Review Reports


2007 (1)

 

     In-silico TAT-PTD prediction for cell penetrating peptides.

         Tandon C, Aggarwal A, Goel P, Sengupta D, Naik P,  8 (1) : 115-138, 2007

         Department of Biotechnology and Bioinformatics, Jaypee University of Information technology, Himachal, Pradesh, India

 

     Binding Modes, binding Affinities and ADME Screening of HIV-1 NNRTI Inhibitor: Efavirnez and its analogues.

         Sengupta D, Verma D, Naik PK 8 (1) : 99-114, 2007

          Department of Bioinformatics and Biotechnology, Jaypee University of Information Technology, Waknaghat, Distt.-Solan, Himachal Pradesh, India.

 

     A Unified Framework for Finding Differentially Expressed Genes in MPTP Mouse Model for Parkinson’s Disease

          Shaik J, Yeasin M 8 (1) : 84-98, 2007

          CVPIA LAB, Department of Electrical and Computer Engineering, University of Memphis, Memphis, Tennessee, 38152, United States.

 

      In silico Cis-regulatory Element Analysis of Seed Storage Protein Promoters Cloned from Different Cultivars of Wheat, Rice and Oat

          Yadav D,  Singh VK, Singh NK  8 (1) : 75-83, 2007 

          Department of Molecular Biology and Genetic Engineering, College of Basic Sciences and Humanities G.B. pant University of Agriculture and Technology, Pantnagar 

          (Uttarakhand)  National Research Center on Plant  Biotechnology, Indian Agriculture Research Institute, New Delhi 110012

 

     In Silico Identification of Antioxidant gene G6PD in Caenorhabditis elegans

          Jitendra N, Prachi S, Alpana V, Shakti S 8 (1) : 61-74, 2007

          Bioinformatics Centre, AIB, Amity University, Noida, UP, INDIA


     An Indigenous Integration System for Biodiversity Databases

          Sarinder KKS, Lim LHS , Dimyati K, Merican AF, 8 (1) : 56-60, 2007
         
Institute of Biological Sciences, Faculty of Science, University of Malaya, and Department of Electrical Engineering, Faculty of Engineering, University of Malaya.


    
Unbalanced Factorial Design: Type I, II and III Sums of Squares
         
Boyacioglu H, Baskan O 8 (1) : 56-55, 2007  

          Ege University Faculty of Science, Department of Statistics, Bornova, Turkey

 

      Comparative analysis of MMFF94x and AMBER99 force fields using aspartic-serine-metallo proteases and Sugar-Binding Proteins as different data sets.  
          Singh H, Marla SS,
Verma D 8 (1) : 45-55, 2007

          Biotechnology and Bioinformatics Department, Jaypee University of Information Technology, Waknaghat, Solan (H.P.) India 173215

 

     Database and interactome map of genes involved in oral cancer

          Gadewal NS, Zingde SM 8 (1) : 41-44, 2007

          Bioinformatics centre (BTIS Sub-DIC) and Advanced Centre for Treatment Research and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, 410210, India

 

      PIDA: A new algorithm for pattern identification
         
Putonti C, Pettitt BM, Reid JG, Fofanov Y 8 (1) : 30-40, 2007
         
Departments of Computer Science, Biology and Biochemistry, and Chemistry, University of Houston, Houston Texas, USA


     Plasma proteome knowledgebase: exploring disease biomarker correlations
         
Iyer J, Srinivas VM, Khamari L, Sequeira JM, Das N, Periasamy UR, Bhate 8 (1) : 18-29, 2007
         
Molecular Connections Pvt. Ltd., Bangalore, India


      A comparison of information on molecular interactions available in full-length publications versus abstracts
         
Mahadevan U, Bhate J, Raghunath A,  Kashyap S, Dey PC, Prakash N, Bhat B, Zachariah LL, Wong, L  8 (1) : 8-17, 2007
         
Molecular Connections Pvt. Ltd., Bangalore, India, and National Institute of Singapore, Republic of Singapore


      In silico tools for evaluation of conservation homology among interleukins.
         
Krupanidhi S, Madhukar SS, Doughman SD  8 (1) : 1-7, 2007
          Department of Biosciences, Sri Sathya Sai Institute of  Higher Learning, Prasanthinilayam, Department of Bioinformatics, Sathyabama Institute of Science and Technology,

          Chennai-600119 TN, India and  Department of Nutrition,  University of North Carolina, Chapel Hill, NC 27599 USA.


2006 (2)

 

     Plant promoter prediction tool and isolation of a promoter from Porteresis coarctata   
         
Mahalakshmi S, Krishna NC, Rao KV,  Reddy VD  7 (2) : 118 - 139, 2006
        
 Centre for Plant Molecular Biology, Osmania University, Hyderabad, India and SR Software, Jubilee Hills, Hyderabad, India


     A flexible spot recognition method for SNP microarray systems
          Huang CY, Liu L
7 (2) : 101-117, 2006

          Center for
Pharmacogenomics and Complex Disease Research, University of Medicine & Dentistry of New Jersey, Newark, NJ 07101, USA  and Department of Applied

          Mathematics, Chung Yuan Christian  University, Chung-Li, Taiwan 32023, ROC


     A computer-intensive method to analyse microarray experiments with a very small number of replications in case of heteroscedasticity
         
Muhammad MA,
Neuhäuser M 7 (2) : 90-100, 2006
          Institute for Medical Informatics, Biometry and Epidemiology, University Hospital Essen, Hufelandstr. 55, D-45122 Essen and Department of Mathematics and Technique,

          RheinAhrCampus, Koblenz . University of Applied Science, Südallee 2, D-53424 Remagen, Germany.

 

     In silico Homology modeling and Structure assessment of Holo (Acyl Carrier Protein) synthetase from Treponema pallidum   
         
Dowlathabad MR,  Venkata RD, Rallapalli R  7 (2) : 85 - 89, 2006
         
Department of Biotechnology, Bioinformatics Laboratory and Department of Microbiology, Sri Krishnadevaraya University, Anantapur-AP India 

 

     Structural Classification of Protein Using Surface Roughness Index
         
Singha S1, Lahiri T1, Dasgupta AK, Chakrabarti P 7 (2) : 74-84, 2006

          Department of Biotechnology, Institute of Engineering & Technology, U. P. Technical University, Sitapur Road, Lucknow, India


   
 Genomic predictions for T Lymphocyte epitopes on Plasmodium falciparum (Malaria)
          Singh SP, Khan F
Mishra BN 7 (2) : 69-73, 2006
         
 Department of Biotechnology, Institute of Engineering & Technology, U. P. Technical University, Sitapur Road, Lucknow-226021 (U.P.)  India


    
 Conservation of the regulatory pho-box in acetoacetyl-CoA reductase promoters across bacterial PHB biosynthetic metabolic pathway
           Khan F, Singh SP,
Mishra BN 7 (2) : 57-68, 2006

           Department of Biotechnology, Institute of Engineering & Technology, U. P. Technical University, Sitapur Road, Lucknow-226021 (U.P.) India

 


2006(1)
 

       Extending the Dynamic Range of Signal Intensities in DNA Microarrays
           
Choi D, O’Malley JP, Lasarev MR, Lapidus J, Lu X, Pattee P, Nagalla SR 7 (1) : 46-56, 2006
            Division of Biostatistics, Department of Public Health and Preventive Medicine, Center for Biomarker Discovery, Department of Pediatrics, Center for Research on Occupational

            and  Environmental  Toxicology,  Oregon Health & Science University, Oregon, USA

 

       Comparative structure analysis of Chorismate synthase   

            Marla S , Yalamanchili HK,  Gelli P, Singh HK, Praveen G, Ghatta G, Srikanth S, Goutham K. 7 (1) : 35-45, 2006

            Biotechnology and Bioinformatics Department, JayaPrakash University of Information technology, Solan, India.


       Statistical Potential Determining Protein Interaction Sites

            Williams G 7 (1) : 32-34, 2006
          
 Wolfson Centre for Age Related Diseases, The Wolfson Wing, Hodgkin Building, Kings College London, United Kingdom

 

       Classification of incipient Alzheimer patients using gene expression data: Dealing with potential misdiagnosis
            Robbins K, Joseph S, Zhang W, Rekaya R,  Bertrand JK 7 (1) : 22-31, 2006

            Department of Animal and Dairy Science, and Statistics, University of Georgia, Athens, Georgia USA.

 

       Clusterer: extendable java application for sequence grouping and cluster analyses

            Klepac-Ceraj V, Ceraj I, Polz MF, 7 (1) 15-21, 2006
          
 Information Services and Technology, and Department of Civil and Environmental Engineering, Massachusets Institute of  Technology (MIT), Cambridge, MassachusetsUSA.

 

       A correction for expression value dependencies in Affymetrix

            Broemel F, Kruse E, Neuhäuser M, Dürig J, JÖckel KH, 7 (1) : 1-14, 2006

            Institute for Medical Informatics, Biometry and Epidemiology, and Department of Hematology, University Hospital, Essen and Department of Botany, Faculty of Biology, 

            Technical UniversityDarmstadt, Germany.


2005(2)

 

       Boosting Speed of MS/MS Peptide Sequencing via Database Search by Spectral Profile Comparison
            Liu J, Carrillo B,
Yanofsky C, Beaudrie C, Morales F, Kearney R  6 (2) 174-183, 2005

            Department of Biomedical Engineering, McGill University, Montreal Quebec, Canada.

 

        The Effect of Inverse Document Frequency Weights on DNA Sequence Retrieval
            
O'Kane KC  6 (2) 162-173, 2005

             Department of Computer Science, The University of Northern Iowa, Cedar Falls, Iowa 50613-0507, USA.


       
Binding of fork head protein to DNA partly determined by base cooperation.
             Mach V  6 (2) 149-161, 2005
             Institute of Entomology, Czech Academy of Sciences, České Budějovice, Czech Republic. Department of Computer Science and Mathematics, Ariel Academic College in Yudea

             and Samaria and ELTA Systems Ltd. Israel

 

        In silico identification of cis-regulatory elements in Mesorhizobium loti

             Khan F, Agrawal S, Mishra BN  6 (2) : 129-141, 2005
             Department of Biotechnology, Institute of Engineering & Technology and Jawahar Lal Nehru Center of Advanced Research, Bangalore, India.
 

        DNA microarray model for computation of absolute gene expression level

            Xu, M 6 (2) : 121-128, 2005

            Gene21st, 19 Belcourt Rd. Worcester, MA 01605, USA.

 

        MIPE an XML format to facilitate the storage and exchange of PCR-related data

            Aerts JA, Veenendaal T 6 (2) : 114-120, 2005.

             Bioinformatics Group, Roslin Institute, United Kingdom, Animal Breeding and Genetics Group, Wageningen University, The Netherlands.

 


2005 (1)

 

       Automated Long Oligo Design on Consensus Regions of Similar Genomes
           
Schretter C, Milinkovitch MC 6 (1) 107 -113, 2005
           
Unit of Evolutionary Genetics (UEG), Institute of Molecular Biology and Medicine (IBMM), Université Libre de Bruxelles (ULB).


       Combining Kernel Dimension-Reduction with Regularized Classifiers for Tissue Categorization
           
Shen L, Tan EC 6 (1) : 91-106, 2005
           
School of Computer Engineering, Nanyang Technological University, Singapore, 639798.


       In silico identification and modelling of a putative iron-regulated TonB-dependant outer membrane receptor protein from the genome of Leptospira interrogans serovar Lai
           
Sritharan M, Ramadevi S, Pasupala N, Asuthkar S, Tajne S 6 (1) : 74-90, 2005

           Department of Animal Sciences, University of Hyderabad, Hyderabad, India; Informatics Division, GVK Biosciences Pvt Ltd, Hyderabad, India


       Eulerian Superpath Approach to Correct Sequencing Error in Shotgun Assembly

            Shi W, Zhou W, Zheng W 6 (1) : 65-73, 2005

            School of Information Technology, Deakin University, Australia, Institute of High Performance Computing, Department of Computer Science and Technology Tsinghua

            University, China.

 

       From prediction of subcellular localization to functional classification: Discrimination of DNA- packing and other nuclear proteins
           
Höglund A, Dönnes P, Adolph HW, Kohlbacher O 6 (1) : 51-64, 2005

            Department(s) of Simulation of Biological Systems, WSI/ZBIT,
Eberhard Karls University Tübingen, Sand 14, D-72076 Tübingen and Biochemistry and Center for

            Bioinformatics, Saarland University, D-66041, Saabrücken, Germany


       Substitution of polymorphic amino acids in proteins:Predicting functional alterations using amino acid properties.
           
Baksi K, Bhattacharyya NP.  6 (1) : 42-50, 2005

           Crystallography and Molecular Biology Division, Saha Institute of Nuclear Physics, Kolkata 700 064, India.

 

       Morphometric and Distance Computational Software for evolutionary studies.
           
Carvajal-Rodríguez A, Rodríguez MG
  6 (1) : 34-41, 2005.
           
Departamento de Bioquímica, Genética e Inmunología, Facultad de Ciencias, Universidad de Vigo, 36310 VIGO, Spain

 

       Support vector machines and bioinformatics

            Sethi RJ  6 (1) : 22-33, 2005.

            Computer Science and Engineering Department and Marlan & Rosemary Bourns College of Engineering, University of California-Riverside, USA

 

       A novel method to predict protein subcellular localizations
            Huang J, Shi F,
6 (1) : 8-21, 2005.
           
Schools of Computer Science, Science, Mathematics and Statistics, Huazhong Agricultural University, Wuhan, Hubei province, P.R. China.


       MolVRML: build VRML models of 3D molecular structures
           
Zou Y,  6 (1) :1-7, 2005.
          
 School of Computer Science and Information Technology, RMIT University, VIC 3001 Australia


2004
 

 

       Prediction of transcriptional regulation by Dlx and Msx homeodomain proteins
            
Swarnalatha M, Jutur PP, Amouda V, Mathur PP, Reddy AR 5 : 132-145, 2004

            Bioinformatics Centre, Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Pondicherry, India


      
In silico gene identification and homology modeling of Chorismate synthase in Clostridium difficile  

            Sunita T, Ramadevi S 5 :129-131, 2004.

            Informatics Division, GVK Biosciences Pvt Ltd, Hyderabad, India

 

       MCM-Based clustering for time-course gene expression data

            Wu FX, Zhang WJ, Kusalik AJ  5 :102-128, 2004

            Division of Biomedical Engineering, Department of Computer Science, University of Saskatchewan, Saskatoon, Canada

 

       Parallel DNA fragment assembly algorithm based on Eulerian superpath

            Zheng W, Shi W, Zhou W  5 : 91-101, 2004

            Institute of High Performance Computing Department of Computer Science and Technology Tsinghua University, China and School of Information Technology,

            Deakin University, Australia.

 

       Bayesian mixture modelling of species divergence
            Adam A,
  Mengersen K, Baker P 5 : 69-90, 2004.

            INSEE, CREST, Paris, France, Queensland University of Technology and CMIS, CSIRO, Australia


       Reliability of RNA secondary structure prediction with XNAfold

            Zou Y 5 : 59-68, 2004.

            School of Agriculture and Food Systems, University of Melbourne and School of Computer Science and Information Technology, RMIT University VIC 3001 Australia.

 

       Wave analysis of microarray expression as predictor of gene expression in tumors.

            Gupta A, Agrawal S 5 : 49-58, 2004.

            Indian Institute of Information Technology Allahabad, Deoghat Jhalwa Campus, RajRooppur Road, India

 

        Phylogenetic clustering and secondary structural analysis of Plant Terpenoid Synthases

            Singh IV, Agrawal S, Khan F,  Mishra BN 5 : 32-48, 2004.

            Department of Biotechnology, Institute of Engineering & Technology, Uttar Pradesh and Bioinformatics Division Indian Institute of Information Technology, AllahabadIndia

 

        GASP: a new genetic algorithm (based on) surviving probability.

             Carvajal-Rodríguez A 5 : 23-31, 2004.

             Departamento de Bioquímica, Genética e Inmunología, Facultad de Ciencias Universidad de Vigo, 36200 VIGO, Spain

 

        Prediction of protein homo-oligomers by incorporating quasi-sequence-order effect

             Zhang SW, Pan Q, Zhang HC, Wu YH, Shi JU 5 : 13-22, 2004.

             Department of Automatic Control, Northwestern Polytechnical University, Xi’an 710072, People’s Republic of China

 

        Molecular phylogenetics and functional evolution of major RNA recognition domains of recently cloned and characterized autoimmune RNA-binding particle

             Suleymanoglu E 5: 1-12, 2004.     

             Institute of Biochemistry, University of Vienna, Medical Faculty, Vienna Biocenter, Dr. Bohr-Gasse 9/3, A-1030, Vienna, Austria


2003
 

 

         Identification of GltC transcription factor binding DNA motifs and its novel co-regulated genes in nitrogen fixing bacteria

              Khan F,  Agrawal S,  Mishra BN   4:106-114, 2003

              Biotechnology Program, Institute of Engineering & Technology,Sitapur road, Lucknow-22, India.

 

         Matching carbohydrate-binding domains in Arabidopsis thaliana genome: development of a lectin database
              Moreno FB,
Facó F, Ceccatto VM, Sampaio AH, Costa ABS, Freitas JLT, Nogueira LL, Lima ME,  Lima-Filho JL, Cavada BS,  4:96-105, 2003

              Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE Campus do Pici, Universidade Estadual do Ceará (UECE) , Departamento

              de Engenharia de Pesca, Universidade Federal do Ceará, Fortaleza-CE, Universidade Federal do Pernambuco (UFPE), Universidade Federal do Pernambuco(UFPE), Brazil.


2002
 

 

 

         In Silico Markovian Bioinformatics for predicting 1Ha-NMR chemical shifts in mouse Epidermis Growth  Factor(mEGF).
             
Díaz HG, De Armas RR, Uriarte E. 3:83-95, 2002. 

              Chemical Bio-actives Center, Department of Chemistry, Central University of "Las Villas" 54830, Cuba. Department of Organic Chemistry,  Faculty of Pharmacy, 

              University of Santiago de Compostela 15706, Spain


         Simple Object Access Protocol (SOAP) for Bioinformatic Software Interoperability  

              Xia Y, Stinner RE, Wang X.  3:74-82, August 2002.

              NSF Center for IPM North Carolina State University, Raleigh, NC 27695-7553, 2 Department of Plant Pathology North Carolina State University Raleigh, NC 27695, USA.


         BAO, A Biological and Chemical Ontology For Information Integration  

              Ben-Miled Z, Webster YW, Nianhua L, Bukres O, Nayar AK, Martin J, Oppelt R.  3:60-73, June 2002  

              Electrical Engineering Department, Purdue School of Eng. &: Tech. Computer &: Information Science, Purdue School of Science, Lilly Corporate Center,

              Eli Lilly and  Company, USA.


         A software package for drawing ideograms automatically.    

              BÖhringer S, GÖdde R, BÖhringer D, Schulte T, Epplen JT 3 : 51-59, May 2002.
              Department of molecular human genetics,  Ruhr University
Bochum, Department of ophthalmology, University clinics, Düsseldorf, Germany

 

         The corporate information factory as a Bioinformatics framework    

              Casey, RM  3:42-50, April 2002.  

              Agilent Technologies, Inc. Information Technology, Agilent Technologies, Inc. Headquarters 395 Page Mill Rd. Palo Alto, CA 94306,  USA


2001

 

         An unsupervised neural network approach for discovery of gene expression patterns in B-cell lymphoma .

              Azuaje F,  2:26-41, 2001. 

              Department of Computer Science, Trinity College, Ireland

 

         Development of a web-based informatics educational exercize in genomics.     

              Flower R 2:22-25, 2001  

              A/Professor, Department of Haematology and Transfusion Medicine, University of Sydney and Principal Scientist, PaLMS Transfusion Services, Northern Sydney Health


1996-2000

 

         Bioinformatics and Extended Markup Language (XML).
              
Guerrini VH, Jackson D 1:12-21, 2000.  

              Distributed Systems Technology Centre (DSTC) Pty. Ltd and school of Veterinary Science,  University of Queensland, St Lucia, Queensland 4172, Australia.

 


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